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  • Building a post-quantum certificate authority with Merkle Tree Certificates Mari Galicer
    When you type in an address into a browser, how do you know you’re connecting to the right website? The Web Public Key Infrastructure (Web PKI) is the complex and distributed ecosystem of policies, protocols, and infrastructure operators that helps you trust that you’re not being misdirected to an incorrect or malicious website. In the past few decades, this ecosystem has undergone significant changes. One is the addition of transparency: the now-mandatory requirement that all certificates be lo
     

Building a post-quantum certificate authority with Merkle Tree Certificates

29 de Setembro de 2026, 10:00

When you type in an address into a browser, how do you know you’re connecting to the right website? The Web Public Key Infrastructure (Web PKI) is the complex and distributed ecosystem of policies, protocols, and infrastructure operators that helps you trust that you’re not being misdirected to an incorrect or malicious website. In the past few decades, this ecosystem has undergone significant changes. One is the addition of transparency: the now-mandatory requirement that all certificates be logged in public certificate transparency logs. Now it faces another challenge: the imminent arrival of a quantum computer, which has prompted us to upgrade to post-quantum (PQ) cryptography by 2029.

This transition is not straightforward: simply swapping post-quantum cryptography into certificates at Internet scale would lead to unacceptable performance degradation. This moment calls for a new approach to the Web PKI, one that allows us to treat transparency as a first-party property rather than an add-on, and design a new system that scales post-quantum signatures efficiently.

After gaining broad support across the industry, Merkle Tree Certificates (MTCs) have emerged as the path forward. This year, after a successful experimental deployment with Chrome, Cloudflare is full steam ahead on MTCs.

Following today’s announcement that Cloudflare is becoming a certificate authority (CA), we’re excited to share that this CA will support MTC issuance, targeting early 2027 for inclusion in Chrome’s newly launched Quantum-resistant Root Store. As part of our mission to help build a better Internet, and following in Cloudflare tradition of offering the strongest available cryptography for free, we will provide standard MTC issuance at no cost. Having a CA that supports both classical certificate and MTC issuance allows us to default to the most secure authentication method available, providing a painless and performant PQ upgrade path for a large swath of the Internet.

The current trust ecosystem

To understand how MTCs are changing the game, let's start with some background on how trust works on the web today.

On the client side, browsers — in this case, “TLS clients” — maintain root programs, which specify a set of policies that CAs must follow to be trusted. On the server side, CAs are the trusted gatekeepers: they operate certificate issuance infrastructure where they validate domain ownership and attest to the binding of a domain name and a public key that shows ownership of that domain.

But how do we check that CAs are following the rules? Enter certificate transparency (CT), which makes certificate issuance publicly auditable. When a CA issues a certificate, it must also submit that certificate to at least two public logs. Cloudflare has operated the Nimbus family of CT logs since 2016, and is launching Raio, a new family of static CT logs, going forward.

While the CT ecosystem makes certificates publicly viewable, it doesn't mean they are correctly issued or safe to use. Monitoring helps with this by comparing those log records with what domain owners expected and reporting suspicious activity. Cloudflare launched Certificate Transparency Monitoring in 2019 and recently made it generally available. We also publish large-scale measurements about certificates on the Certificate Transparency page in Radar (formerly known as Merkle Town).

As organizations begin upgrading their servers to use PQ authentication, certificate transparency monitoring will take on an even more important role in detecting potential post-quantum downgrades. Domain owners who have upgraded their domains to post-quantum authentication should monitor CT logs for unexpectedly issued legacy certificates to prevent clients from falling back on a malicious downgrade path.

Part of the problem with this current system is that transparency was an add-on, causing it to run into scaling issues. Certificates are frequently logged multiple times, in different forms, across multiple logs, requiring monitors to download and process every log to avoid missing an issuance. This can be expensive — making it difficult to encourage a diverse set of log operators at Internet scale. According to our estimates, PQ signatures will balloon the amount of data that CT logs need to store by 40x. This scaling challenge, and subsequent incentive misalignment, is at the heart of the post-quantum scaling problem.

The post-quantum scaling problem

We've written extensively about the challenges of scaling post-quantum cryptography, but in short: to support server authentication at Internet scale, the WebPKI must authenticate roughly a billion TLS servers without preloading every server’s public key into every client. Traditionally, CAs addressed this problem by using certificate chains as a trust-distribution mechanism. But over time, additions like key revocation checks and certificate transparency have added more public keys and signatures — five signatures and two keys in a typical TLS handshake. PQ signatures are roughly 40 times larger than classical ones, creating larger overheads that would be expensive for clients, CAs, logs, and monitors to handle at scale.

Enter Merkle Tree Certificates (MTCs), a draft specification from the IETF PLANTS working group that describes an architecture for compact, efficient, post-quantum certificates. MTCs batch certificates into an append-only Merkle tree, allowing a CA to sign the root of that tree instead of many individual certificates. This allows browsers or other clients to verify a certificate using a compact inclusion proof — a sequence of cryptographic hashes — against a signed tree head rather than validating each certificate individually. A key idea behind MTCs is "don't log what you issue, issue by logging." By coupling issuance and logging, transparency becomes a requirement for operation, rather than an add-on.

The role of a certificate authority in a redesigned PKI

We’re building out our capability to issue MTCs as an integral part of our creation of a Cloudflare CA. That means keeping track of new PQ Root Program requirements, and writing an issuance and mirroring software stack at the same time we’re building the facilities, operations, and compliance functions of the traditional  CA — no small feat!

The upside is that we get to prioritize the requirements and architecture for this new, post-quantum PKI from day one, building our setup in a way that feels right for Cloudflare's values and global network — aiming to be as transparent as possible as we embark on this new journey.

Let’s take a look at the architecture updated for MTC:

If you compare this to the traditional CA ecosystem, you'll notice that the responsibilities of a CA stay mostly the same: to validate control of a domain, bind it to a public key, and issue certificates. The main difference is that in the MTC ecosystem, instead of signing certificates directly and then logging them, the CA now maintains a transparency log backed by a Merkle tree, where an inclusion proof that the certificate is indeed in the tree serves as the trust anchor. CAs will also operate Mirroring cosigners that store a copy of issuance logs, verifying their append-only consistency and ensuring the transparency and availability of these logs for the broader ecosystem.  

Issuing MTCs

MTCs come in two forms, both of which can be encoded in the X.509 certificate format that client software recognizes today — just with a “funny” signature algorithm. In standalone form, the certificate’s signature value contains a cosigned tree head of an issuance log and an inclusion proof (a sequence of hashes) demonstrating that the certificate is contained in that log. If clients are able to obtain the cosigned tree heads out of band (e.g., via a browser update mechanism), the certificate can instead be served in landmark-relative form, where the signature value consists of the lightweight inclusion proof with no heavyweight post-quantum signatures at all.

For simplicity’s sake, let’s take a look at an example of standalone certificate issuance. When a website wants a certificate for their domain, they can request it from a CA via the Automatic Certificate Management Environment (ACME) protocol, which handles certificate requests, domain-control validation, and issuance workflows. Cloudflare's ACME infrastructure will be a fork of Boulder, the widely deployed and well-tested ACME software that powers Let's Encrypt. Let's Encrypt is actively developing MTC support in Boulder, and we plan to maintain our own fork that incorporates these upstream changes along with Cloudflare-specific modifications, contributing back upstream where possible.

When the MTC CA receives a certificate issuance request, the CA's ACME server checks that the server actually controls the domain. If those checks pass, the CA serializes that data and adds it to an append-only log.

After adding the MTC entry into its issuance log, the CA computes the updated state of the log, and then signs a checkpoint over that state. This checkpoint attests that the CA issued every entry included in the log’s Merkle tree up until that point in time.

The CA then sends its updated log state and new checkpoint to a trusted cosigner, which durably stores a copy of the CA's issuance log and checks that each new state is append-only, consistent with the previous tree, and correctly formed. This additional cosignature gives clients and monitors confidence that another trusted party has observed the same log state and verified that the CA is not presenting different views of issuance to different parts of the ecosystem. It also ensures that the issued certificates will be available for monitoring even if the CA issuance log is unavailable.

Chrome’s Quantum-resistant Root Program draft policy mandates at least two cosignatures: one from a Chrome-recognized Mirroring Cosigner operated by a distinct organization, and one from the issuing MTC CA itself. As such, we'll operate mirrors for other pilot CAs — and require at least one independent cosignature on our own issued certificates.

Cloudflare will implement our mirroring cosigner in Azul, our open-source Rust-based transparency log, and for maximal interoperability, it will implement c2sp's tlog mirror protocol.

Finally, after successfully receiving a cosignature from a mirroring cosigner, the CA constructs an MTC with the cosignatures, server's public key, and an inclusion proof. It then sends that MTC to the server, which can then use it for TLS moving forward!

Delivering PQ signatures efficiently: the landmark optimization

While standalone certificates are functional, they still send large PQ signatures over the TLS handshake, limiting their efficiency. The real performance improvements provided by the MTC design are landmark-relative certificates.

Instead of sending cosignatures in every certificate, CAs can designate a sequence of subtrees that cover all active certificates in the log as a landmark, and distribute those subtrees (along with data to authenticate them) to clients via an out-of-band update service. During a TLS handshake, the actual authentication to the server happens by the browser checking that the server's certificate data — including its domain name and public key — appears in a trusted subtree of the CA’s log. If the inclusion proof connects that certificate to a cosigned landmark, and the public key then proves possession during the TLS handshake, the client knows it is talking to the right server.

Periodically transmitting these signatures and tree metadata to TLS clients out of band, a small set of MTC batch signatures can efficiently cover billions of certificates issued by a given CA. While landmarks are more efficient at scale, they do not eliminate the need for standalone MTCs — clients may be newly installed, offline, or missing the relevant landmark update. That’s why it’s important that servers retain a standalone certificate fallback.

MTCs in the wild: results of our experiment with Chrome

This year, we ran an experiment with Chrome to test the feasibility of MTCs between a client and server. We operated a "bootstrap CA" (a fake CA that stubbed the issuance pipeline) that issued MTCs backed by a traditional certificate chain for a selection of Cloudflare domains on Cloudflare's "free" plan and served them to 50% of Chrome Beta 146. Over the course of the experiment we successfully served billions of MTCs.

For TLS, we found that the common case is fairly efficient: with a landmark-relative certificate, the handshake only needs to transmit one public key, one signature, and one inclusion proof of less than 1kB. In the experiment, we fell back to the traditional certificate chain instead of serving a standalone certificate in cases where we were unable to negotiate a landmark-relative certificate with the client. On the CT side, MTCs also change the scaling properties of transparency: the log only needs to carry hashes of public keys; there are no per-entry signatures, and the signature on the tree head covers the whole log. This prevents certificate explosion because the CA issuance log is the source of truth for all certificates the CA issues, and log consumers only need to fetch a single copy of each certificate.

The result: MTCs really work! At median, using a MTC is 9% faster using landmark MTCs over a classical signature chain (admittedly, most of this performance benefit is due to intermediate elision). And because we tested MTCs with classical signatures, we expect an even greater improvement with post-quantum signatures. Satisfied with these results, and with the level of cross-industry collaboration with MTCs at the PLANTS WG at the IETF, we began winding down the experiment last month (August 2026).

The road ahead for MTCs

We’re excited that our experiment with Chrome showed that MTCs can work in practice, and are especially excited to be able to issue certificates as a real CA.

However, there are still broader questions that we can only answer by running this great experiment with the full PKI ecosystem. Can independent monitors consume and verify MTC issuance logs at production volume? Will multiple CAs and cosigners emerge so that the system has the diversity needed for resilience? How should browsers balance the performance benefits of compact landmark MTCs with the fallback paths needed for clients without fresh landmarks? MTCs have emerged as the authoritative design for post-quantum authentication, but proving it out at production Internet scale will require participation from a diverse set of root programs, browser vendors, CAs, mirrors, monitors, and the wider community.

We see the opportunity to participate in this next phase of the Web PKI as an honor, and we take the responsibility of operating CA infrastructure seriously. CAs occupy a privileged position in the trust ecosystem — browsers, domain owners, and everyday people rely on them to validate identities correctly, protect signing keys, follow policy, and operate reliably. Before Cloudflare's CA can be trusted by browsers to issue MTCs, we will need to apply to Chrome's Quantum Resistant root store and undergo a rigorous evaluation process. We welcome that scrutiny, and we expect to hold ourselves to the same high bar as any other CA trusted with helping secure the Internet. We hope other CAs will emerge to support MTC adoption, and we're excited to work with any browser that wants to deploy MTCs.

Bringing more transparency to post-quantum usage, encrypted messaging, and routing security

Cloudflare Radar already offers a wide array of security insights — from application and network layer attacks, to malicious email messages, to digital certificates and Internet routing.

And today we’re introducing even more. We are launching several new security-related data sets and tools on Radar: 

  • We are extending our post-quantum (PQ) monitoring beyond the client side to now include origin-facing connections. We have also released a new tool to help you check any website's post-quantum encryption compatibility. 

  • A new Key Transparency section on Radar provides a public dashboard showing the real-time verification status of Key Transparency Logs for end-to-end encrypted messaging services like WhatsApp, showing when each log was last signed and verified by Cloudflare's Auditor. The page serves as a transparent interface where anyone can monitor the integrity of public key distribution and access the API to independently validate our Auditor’s proofs. 

  • Routing Security insights continue to expand with the addition of global, country, and network-level information about the deployment of ASPA, an emerging standard that can help detect and prevent BGP route leaks. 

Measuring origin post-quantum support

Since April 2024, we have tracked the aggregate growth of client support for post-quantum encryption on Cloudflare Radar, chronicling its global growth from under 3% at the start of 2024, to over 60% in February 2026. And in October 2025, we added the ability for users to check whether their browser supports X25519MLKEM768 — a hybrid key exchange algorithm combining classical X25519 with ML-KEM, a lattice-based post-quantum scheme standardized by NIST. This provides security against both classical and quantum attacks. 

However, post-quantum encryption support on user-to-Cloudflare connections is only part of the story.

For content not in our CDN cache, or for uncacheable content, Cloudflare’s edge servers establish a separate connection with a customer’s origin servers to retrieve it. To accelerate the transition to quantum-resistant security for these origin-facing fetches, we previously introduced an API allowing customers to opt in to preferring post-quantum connections. Today, we’re making post-quantum compatibility of origin servers visible on Radar.

The new origin post-quantum support graph on Radar illustrates the share of customer origins supporting X25519MLKEM768. This data is derived from our automated TLS scanner, which probes TLS 1.3-compatible origins and aggregates the results daily. It is important to note that our scanner tests for support rather than the origin server's specific preference. While an origin may support a post-quantum key exchange algorithm, its local TLS key exchange preference can ultimately dictate the encryption outcome.

While the headline graph focuses on post-quantum readiness, the scanner also evaluates support for classical key exchange algorithms. Within the Radar Data Explorer view, you can also see the full distribution of these supported TLS key exchange methods.

As shown in the graphs above, approximately 10% of origins could benefit from a post-quantum-preferred key agreement today. This represents a significant jump from less than 1% at the start of 2025 — a 10x increase in just over a year. We expect this number to grow steadily as the industry continues its migration. This upward trend likely accelerated in 2025 as many server-side TLS libraries, such as OpenSSL 3.5.0+, GnuTLS 3.8.9+, and Go 1.24+, enabled hybrid post-quantum key exchange by default, allowing platforms and services to support post-quantum connections simply by upgrading their cryptographic library dependencies.

In addition to the Radar and Data Explorer graphs, the origin readiness data is available through the Radar API as well.

As an additional part of our efforts to help the Internet transition to post-quantum cryptography, we are also launching a tool to test whether a specific hostname supports post-quantum encryption. These tests can be run against any publicly accessible website, as long as they allow connections from Cloudflare’s egress IP address ranges. 

A screenshot of the tool in Radar to test whether a hostname supports post-quantum encryption.

The tool presents a simple form where users can enter a hostname (such as cloudflare.com or www.wikipedia.org) and optionally specify a custom port (the default is 443, the standard HTTPS port). After clicking "Test", the result displays a tag indicating PQ support status alongside the negotiated TLS key exchange algorithm. If the server prefers PQ secure connections, a green "PQ" tag appears with a message confirming the connection is "post-quantum secure." Otherwise, a red tag indicates the connection is "not post-quantum secure", showing the classical algorithm that was negotiated.

Under the hood, this tool uses Cloudflare Containers — a new capability that allows running container workloads alongside Workers. Since the Workers runtime is not exposed to details of the underlying TLS handshake, Workers cannot initiate TLS scans. Therefore, we created a Go container that leverages the crypto/tls package's support for post-quantum compatibility checks. The container runs on-demand and performs the actual handshake to determine the negotiated TLS key exchange algorithm, returning results through the Radar API.

With the addition of these origin-facing insights, complementing the existing client-facing insights, we have moved all the post-quantum content to its own section on Radar. 

Securing E2EE messaging systems with Key Transparency

End-to-end encrypted (E2EE) messaging apps like WhatsApp and Signal have become essential tools for private communication, relied upon by billions of people worldwide. These apps use public-key cryptography to ensure that only the sender and recipient can read the contents of their messages — not even the messaging service itself. However, there's an often-overlooked vulnerability in this model: users must trust that the messaging app is distributing the correct public keys for each contact.

If an attacker were able to substitute an incorrect public key in the messaging app's database, they could intercept messages intended for someone else — all without the sender knowing.

Key Transparency addresses this challenge by creating an auditable, append-only log of public keys — similar in concept to Certificate Transparency for TLS certificates. Messaging apps publish their users' public keys to a transparency log, and independent third parties can verify and vouch that the log has been constructed correctly and consistently over time. In September 2024, Cloudflare announced such a Key Transparency auditor for WhatsApp, providing an independent verification layer that helps ensure the integrity of public key distribution for the messaging app's billions of users.

Today, we're publishing Key Transparency audit data in a new Key Transparency section on Cloudflare Radar. This section showcases the Key Transparency logs that Cloudflare audits, giving researchers, security professionals, and curious users a window into the health and activity of these critical systems.

The new page launches with two monitored logs: WhatsApp and Facebook Messenger Transport. Each monitored log is displayed as a card containing the following information:

  • Status: Indicates whether the log is online, in initialization, or disabled. An "online" status means the log is actively publishing key updates into epochs that Cloudflare audits. (An epoch represents a set of updates applied to the key directory at a specific time.)

  • Last signed epoch: The most recent epoch that has been published by the messaging service's log and acknowledged by Cloudflare. By clicking on the eye icon, users can view the full epoch data in JSON format, including the epoch number, timestamp, cryptographic digest, and signature.

  • Last verified epoch: The most recent epoch that Cloudflare has verified. Verification involves checking that the transition of the transparency log data structure from the previous epoch to the current one represents a valid tree transformation — ensuring the log has been constructed correctly. The verification timestamp indicates when Cloudflare completed its audit.

  • Root: The current root hash of the Auditable Key Directory (AKD) tree. This hash cryptographically represents the entire state of the key directory at the current epoch. Like the epoch fields, users can click to view the complete JSON response from the auditor.

The data shown on the page is also available via the Key Transparency Auditor API, with endpoints for auditor information and namespaces.

If you would like to perform audit proof verification yourself, you can follow the instructions in our Auditing Key Transparency blog post. We hope that these use cases are the first of many that we publish in this Key Transparency section in Radar — if your company or organization is interested in auditing for your public key or related infrastructure, you can reach out to us here.

Tracking RPKI ASPA adoption

While the Border Gateway Protocol (BGP) is the backbone of Internet routing, it was designed without built-in mechanisms to verify the validity of the paths it propagates. This inherent trust has long left the global network vulnerable to route leaks and hijacks, where traffic is accidentally or maliciously detoured through unauthorized networks.

Although RPKI and Route Origin Authorizations (ROAs) have successfully hardened the origin of routes, they cannot verify the path traffic takes between networks. This is where ASPA (Autonomous System Provider Authorization) comes in. ASPA extends RPKI protection by allowing an Autonomous System (AS) to cryptographically sign a record listing the networks authorized to propagate its routes upstream. By validating these Customer-to-Provider relationships, ASPA allows systems to detect invalid path announcements with confidence and react accordingly.

While the specific IETF standard remains in draft, the operational community is moving fast. Support for creating ASPA objects has already landed in the portals of Regional Internet Registries (RIRs) like ARIN and RIPE NCC, and validation logic is available in major software routing stacks like OpenBGPD and BIRD.

To provide better visibility into the adoption of this emerging standard, we have added comprehensive RPKI ASPA support to the Routing section of Cloudflare Radar. Tracking these records globally allows us to understand how quickly the industry is moving toward better path validation.

Our new ASPA deployment view allows users to examine the growth of ASPA adoption over time, with the ability to visualize trends across the five Regional Internet Registries (RIRs) based on AS registration. You can view the entire history of ASPA entries, dating back to October 1, 2023, or zoom into specific date ranges to correlate spikes in adoption with industry events, such as the introduction of ASPA features on ARIN and RIPE NCC online dashboards.

Beyond aggregate trends, we have also introduced a granular, searchable explorer for real-time ASPA content. This table view allows you to inspect the current state of ASPA records, searchable by AS number, AS name, or by filtering for only providers or customer ASNs. This allows network operators to verify that their records are published correctly and to view other networks’ configurations.

We have also integrated ASPA data directly into the country/region routing pages. Users can now track how different locations are progressing in securing their infrastructure, based on the associated ASPA records from the customer ASNs registered locally.

On individual AS pages, we have updated the Connectivity section. Now, when viewing the connections of a network, you may see a visual indicator for "ASPA Verified Provider." This annotation confirms that an ASPA record exists authorizing that specific upstream connection, providing an immediate signal of routing hygiene and trust.

For ASes that have deployed ASPA, we now display a complete list of authorized provider ASNs along with their details. Beyond the current state, Radar also provides a detailed timeline of ASPA activity involving the AS. This history distinguishes between changes initiated by the AS itself ("As customer") and records created by others designating it as a provider ("As provider"), allowing users to immediately identify when specific routing authorizations were established or modified.

Visibility is an essential first step toward broader adoption of emerging routing security protocols like ASPA. By surfacing this data, we aim to help operators deploy protections and assist researchers in tracking the Internet's progress toward a more secure routing path. For those who need to integrate this data into their own workflows or perform deeper analysis, we are also exposing these metrics programmatically. Users can now access ASPA content snapshots, historical timeseries, and detailed changes data using the newly introduced endpoints in the Cloudflare Radar API.

As security evolves, so does our data

Internet security continues to evolve, with new approaches, protocols, and standards being developed to ensure that information, applications, and networks remain secure. The security data and insights available on Cloudflare Radar will continue to evolve as well. The new sections highlighted above serve to expand existing routing security, transparency, and post-quantum insights already available on Cloudflare Radar. 

If you share any of these new charts and graphs on social media, be sure to tag us: @CloudflareRadar (X), noc.social/@cloudflareradar (Mastodon), and radar.cloudflare.com (Bluesky). If you have questions or comments, or suggestions for data that you’d like to see us add to Radar, you can reach out to us on social media, or contact us via email.

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